MolNFT v1 · #138509 · protein
Crystal structure of H-2DB with the GAP501 peptide (sql)
5WLI: “Crystal structure of H-2DB with the GAP501 peptide (sql)”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #138509 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WLI
- Type
- protein
- Length
- 1,534 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01899, P01887, A0A0Y9W4B5
- Ligands
- PO4
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G, J | — | protein | 276 | — | P01899 |
| B, E, K | — | protein | 98 | — | P01887 |
| C, F, I, L | — | protein | 9 | — | A0A0Y9W4B5 |
| D | — | protein | 277 | — | P01899 |
| H | — | protein | 99 | — | P01887 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A, G, H, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WLI · Crystal Structure of H-2Db with the GAP501 peptide (SQL) · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01899
- Every structure of UniProt P01887
- Every structure of UniProt A0A0Y9W4B5
- Elsewhere: RCSB PDB 5WLI · PDBe 5WLI · UniProt P01899 · UniProt P01887 · UniProt A0A0Y9W4B5
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