MolNFT v1 · #13831 · DNA
Crystal structure of a non-self complementary DNA dodecamer containing an A/T tract: analysis of the effect of crystal environment on local helical parameters
1LP7 · 5'-D(*CP*GP*CP*TP*TP*AP*TP*AP*TP*GP*CP*G)-3': “Crystal structure of a non-self complementary DNA dodecamer containing an A/T tract: analysis of the effect…”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #13831 on GenesisL1: 3D…
- PDB
- 1LP7
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*CP*TP*TP*AP*TP*AP*TP*GP*CP*G)-3'; 5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*AP*GP*CP*G)-3'
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*CP*TP*TP*AP*TP*AP*TP*GP*CP*G)-3' | dna | 12 | — | — |
| B | 5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*AP*GP*CP*G)-3' | dna | 12 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 581 Ų buried · 55 hydrogen bonds · nucleic-nucleic
Compared structures
- 1LP7 · Crystal Structure of a Non-Self Complementary DNA Dodecamer Containing an A/T Tract… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1LP7 · PDBe 1LP7
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