MolNFT v1 · #138223 · protein

Structure of a bacterial polysialyltransferase at 2.2 ångström resolution

5WC6 · Siad: “Structure of a bacterial polysialyltransferase at 2.2 ångström resolution”. X-ray diffraction, 1 ligand (SO4), 6 pockets (best druggability 0.71). MolNFT v1 #138223 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5WC6
Type: protein
Length: 762 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Siad
UniProt: G4RIN4
Ligands: SO4
Pockets: 6 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
M, A	Siad	protein	381	46% helix, 15% strand	G4RIN4

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains M, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	944	0.71	0.76	65	empty
2	342	0.65	0.80	40	empty
3	293	0.52	0.74	37	empty
4	108	0.40	0.75	21	empty
5	107	0.35	0.73	14	empty

Interfaces

1 interface between chains.

M–A · 1112 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

5WC6 · Structure of a bacterial polysialyltransferase at 2.2 Angstrom resolution · the same entry in another collection · chain M against M, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G4RIN4
Elsewhere: RCSB PDB 5WC6 · PDBe 5WC6 · UniProt G4RIN4

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