MolNFT v1 · #138220 · protein

SPOIIIAG

5WC3 · Spoiiiag, stage III sporulation engulfment assemblyprotein: “SPOIIIAG”. Electron microscopy, 20 pockets (best druggability 0.64). MolNFT v1 #138220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WC3
Type: protein
Length: 4,170 residues
Chains: 30
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Spoiiiag, stage III sporulation engulfment assemblyprotein
UniProt: L8AN07
Pockets: 20 · best druggability 0.64

Structure

electron microscopy · 1 distinct chain · 26% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3	Spoiiiag, stage III sporulation engulfment assemblyprotein	protein	139	26% helix, 42% strand	L8AN07

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.64	0.94	22	empty
2	106	0.60	0.86	29	empty
3	109	0.60	0.86	29	empty
4	105	0.59	0.86	29	empty
5	124	0.59	0.84	30	empty

Interfaces

30 interfaces between chains.

R–S · 2063 Å² buried · 34 hydrogen bonds · protein-protein
K–L · 2060 Å² buried · 33 hydrogen bonds · protein-protein
D–E · 2060 Å² buried · 34 hydrogen bonds · protein-protein
0–1 · 2060 Å² buried · 34 hydrogen bonds · protein-protein
Y–Z · 2059 Å² buried · 33 hydrogen bonds · protein-protein

Compared structures

5WC3 · SpoIIIAG · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L8AN07
Elsewhere: RCSB PDB 5WC3 · PDBe 5WC3 · UniProt L8AN07

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