MolNFT v1 · #138101 · protein
The structure of a CoA-dependent acyl-homoserine lactone synthase, bjai, with sah
5W8G · Autoinducer synthase: “The structure of a CoA-dependent acyl-homoserine lactone synthase, bjai, with sah”. X-ray diffraction, 2 ligands (SAH, SO4), 2 pockets (best druggability 0.71). MolNFT v1 #138101 on GenesisL1: 3D structure…
- PDB
- 5W8G
- Type
- protein
- Length
- 212 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autoinducer synthase
- UniProt
- A0A0N0C224
- Ligands
- SAH, SO4
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autoinducer synthase | protein | 212 | 36% helix, 26% strand | A0A0N0C224 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.71 | 0.84 | 28 | SAH, SO4 |
| 2 | 63 | 0.35 | 0.77 | 15 | empty |
Compared structures
- 5W8G · The structure of a COA-dependent acyl-homoserine lactone synthase, BjaI, with SAH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0N0C224
- Elsewhere: RCSB PDB 5W8G · PDBe 5W8G · UniProt A0A0N0C224
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