MolNFT v1 · #138071 · protein

Crystal structure of roqn

5W7M · Glandicoline B O-methyltransferase roqn: “Crystal structure of roqn”. X-ray diffraction, 1 ligand (SAH), 1 pocket (best druggability 0.74). MolNFT v1 #138071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5W7M
Type: protein
Length: 273 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glandicoline B O-methyltransferase roqn
EC: 3.1.1.-
UniProt: B6HJU2
Ligands: SAH
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glandicoline B O-methyltransferase roqn (EC 3.1.1.-)	protein	273	49% helix, 26% strand	B6HJU2

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	637	0.74	0.80	58	SAH

Compared structures

5W7M · Crystal structure of RoqN · the same entry in another collection · chain A against A, TM-score 1.00
B6HJU2 · AlphaFold monomer V2.0 prediction for glandicoline B O-methyltransferase roqn (B6HJU2) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B6HJU2
Elsewhere: RCSB PDB 5W7M · PDBe 5W7M · UniProt B6HJU2

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