MolNFT v1 · #138049 · protein

X-ray structure of rbmb from streptomyces ribosidificus

5W70: “X-ray structure of rbmb from streptomyces ribosidificus”. X-ray diffraction, 1 ligand (9YM). MolNFT v1 #138049 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5W70
Type: protein
Length: 828 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q4R0W2
Ligands: 9YM

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	414	—	Q4R0W2

Ligands and binding sites

9YM · [4-({[(1R,2S,3S,4R,5S)-5-amino-2,3,4-trihydroxycyclohexyl]amino}methyl)-5-hydroxy-6-methylpyridin-3-yl]methyl dihydrogen phosphate · ligand · 2 copies · chains A, B
EDO · 1,2-ethanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5W70 · X-ray Structure of RbmB from Streptomyces ribosidificus · the same entry in another collection · chain A against A, TM-score 1.00
Q4R0W2 · AlphaFold monomer V2.0 prediction for L-GLUTAMINE:2-deoxy-scyllo- inosose… · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4R0W2
Elsewhere: RCSB PDB 5W70 · PDBe 5W70 · UniProt Q4R0W2

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