MolNFT v1 · #137941 · protein
Crystal structure of POPP2 in complex with IP6, accoa and the wrky domain of RRS1-R .
5W3X: “Crystal structure of POPP2 in complex with IP6, accoa and the wrky domain of RRS1-R .”. X-ray diffraction, 3 ligands (IHP, ACO, ZN). MolNFT v1 #137941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W3X
- Type
- protein
- Length
- 817 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0S4VB05, C4B7M5
- Ligands
- IHP, ACO, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 335 | — | A0A0S4VB05 |
| B | — | protein | 67 | — | C4B7M5 |
| C | — | protein | 342 | — | A0A0S4VB05 |
| D | — | protein | 73 | — | C4B7M5 |
Ligands and binding sites
- IHP · Inositol hexakisphosphate · ligand · 2 copies · chains A, C
- ACO · Acetyl coenzyme *A · ligand · 2 copies · chains A, C
- ZN · Zinc ion · metal · 2 copies · chains B, D
- GOL · Glycerol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5W3X · Crystal structure of PopP2 in complex with IP6, AcCoA and the WRKY domain of RRS1-R . · the same entry in another collection · chain C against C, TM-score 1.00
- C4B7M5 · AlphaFold monomer V2.0 prediction for disease resistance protein RRS1 (C4B7M5) · a predicted model of the same protein · chain B against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S4VB05
- Every structure of UniProt C4B7M5
- Elsewhere: RCSB PDB 5W3X · PDBe 5W3X · UniProt A0A0S4VB05 · UniProt C4B7M5
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