MolNFT v1 · #137865 · protein
Crystal structure of HPV16 L1 pentamer bound to heparin oligosaccharides
5W1O: “Crystal structure of HPV16 L1 pentamer bound to heparin oligosaccharides”. X-ray diffraction, 2 ligands (JHM, IDS). MolNFT v1 #137865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W1O
- Type
- protein
- Length
- 2,131 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q81007
- Ligands
- JHM, IDS
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 427 | — | Q81007 |
| D | — | protein | 425 | — | Q81007 |
| E | — | protein | 425 | — | Q81007 |
Ligands and binding sites
- JHM · 2-deoxy-6-O-sulfo-alpha-D-glucopyranose · ligand · 13 copies · chains A, B, E, C, D
- IDS · 2-O-sulfo-alpha-L-idopyranuronic acid · sugar · 13 copies · chains A, E, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5W1O · Crystal Structure of HPV16 L1 Pentamer Bound to Heparin Oligosaccharides · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81007
- Elsewhere: RCSB PDB 5W1O · PDBe 5W1O · UniProt Q81007
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