MolNFT v1 · #137834 · protein
Crystal structure of monomeric MSP1 from S. cerevisiae
5W0T · Protein MSP1: “Crystal structure of monomeric MSP1 from S. cerevisiae”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #137834 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W0T
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein MSP1
- UniProt
- P28737
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein MSP1 | protein | 298 | 53% helix, 10% strand | P28737 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.48 | 0.82 | 20 | EDO |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 5W0T · Crystal structure of monomeric Msp1 from S. cerevisiae · the same entry in another collection · chain A against A, TM-score 1.00
- P28737 · AlphaFold monomer V2.0 prediction for outer mitochondrial transmembrane helix translocase… · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28737
- Elsewhere: RCSB PDB 5W0T · PDBe 5W0T · UniProt P28737
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