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MolNFT v1 · #137820 · protein

Crebbp bromodomain in complex with CPD3 ((S)-1-(3-(6-(1-methyl-1H- pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl)-1-(tetrahydrofuran-3-yl)- 1,4,6,7-tetrahydro-5H-PYRAZOLO[4,3-C]PYRIDIN-5-YL)ETHAN-1-one)

5W0F · Creb-binding protein: “Crebbp bromodomain in complex with CPD3 ((S)-1-(3-(6-(1-methyl-1H…”. X-ray diffraction, 1 ligand (9U7), 1 pocket (best druggability 0.44). MolNFT v1 #137820 on GenesisL1: 3D structure, binding sites and…

PDB
5W0F
Type
protein
Length
114 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Creb-binding protein
EC
2.3.1.48
UniProt
Q92793
Ligands
9U7
Pockets
1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACreb-binding protein (EC 2.3.1.48)protein11468% helix, 0% strandQ92793

Ligands and binding sites

  • 9U7 · 1-{3-[6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl]-1-[(3S)-oxolan-3-yl]-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}ethan-1-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1800.440.80189U7

Compared structures

  • 5W0F · CREBBP Bromodomain in complex with Cpd3 ((S)-1-(3-(6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydr… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q92793 · AlphaFold monomer V2.0 prediction for creb-binding protein (Q92793) · a predicted model of the same protein · chain A against A, TM-score 0.99

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