MolNFT v1 · #137802 · protein
Sperm whale myoglobin V68A/I107Y with nitric oxide
5VZQ: “Sperm whale myoglobin V68A/I107Y with nitric oxide”. X-ray diffraction, 4 ligands (HEM, SO4, NO). MolNFT v1 #137802 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VZQ
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P02185
- Ligands
- HEM, SO4, NO, NO2
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 153 | — | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- NO · Nitric oxide · ion · chains A
- NO2 · Nitrite ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VZQ · Sperm whale myoglobin V68A/I107Y with nitric oxide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 5VZQ · PDBe 5VZQ · UniProt P02185
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