MolNFT v1 · #137737 · protein
Crystal structure analysis of human clybl in complex with propionyl- CoA
5VXO: “Crystal structure analysis of human clybl in complex with propionyl- CoA”. X-ray diffraction, 2 ligands (1VU, PO4). MolNFT v1 #137737 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VXO
- Type
- protein
- Length
- 894 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N0X4
- Ligands
- 1VU, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 298 | — | Q8N0X4 |
Ligands and binding sites
- 1VU · propionyl Coenzyme A · ligand · 3 copies · chains A, B, C
- PO4 · Phosphate ion · ion · chains A, B, C
- EDO · 1,2-ethanediol · additive · 28 copies · chains A, B, C
- PEG · Di(hydroxyethyl)ether · additive · 7 copies · chains A, B, C
- PGE · Triethylene glycol · additive · 3 copies · chains A, B, C
- PG4 · Tetraethylene glycol · additive · 3 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VXO · Crystal Structure Analysis of human CLYBL in complex with propionyl-CoA · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N0X4 · AlphaFold monomer V2.0 prediction for citramalyl-CoA lyase, mitochondrial (Q8N0X4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N0X4
- Elsewhere: RCSB PDB 5VXO · PDBe 5VXO · UniProt Q8N0X4
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