MolNFT v1 · #137705 · protein

Ligand free structure of cytochrome P450 TBTJ1

5VWS: “Ligand free structure of cytochrome P450 TBTJ1”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.80). MolNFT v1 #137705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VWS
Type: protein
Length: 376 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome P450
UniProt: D6Y4Z8
Ligands: HEM
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome P450	protein	376	55% helix, 11% strand	D6Y4Z8

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	758	0.80	0.84	63	HEM

Compared structures

5VWS · Ligand free structure of Cytochrome P450 TbtJ1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6Y4Z8
Elsewhere: RCSB PDB 5VWS · PDBe 5VWS · UniProt D6Y4Z8

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