MolNFT v1 · #137663 · protein
Crystal structure of the effector binding domain of lysr-type transcriptional regulator, occr from agrobacterium tumefaciens
5VVH: “Crystal structure of the effector binding domain of lysr-type transcriptional regulator, occr from…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #137663 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VVH
- Type
- protein
- Length
- 1,668 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A4T3
- Ligands
- SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, F | — | protein | 208 | — | P0A4T3 |
| B, H | — | protein | 209 | — | P0A4T3 |
| C, G | — | protein | 208 | — | P0A4T3 |
| D | — | protein | 210 | — | P0A4T3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, D, H
- FMT · Formic acid · additive · 6 copies · chains A, B, D, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VVH · Crystal Structure of the Effector Binding Domain of LysR-type Transcriptional Regulator… · the same entry in another collection · chain H against H, TM-score 1.00
- P0A4T3 · AlphaFold monomer V2.0 prediction for octopine CATABOLISM/UPTAKE operon regulatory… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A4T3
- Elsewhere: RCSB PDB 5VVH · PDBe 5VVH · UniProt P0A4T3
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