MolNFT v1 · #137619 · protein + DNA
Tna polymerase, closed ternary complex
5VU8: “Tna polymerase, closed ternary complex”. X-ray diffraction, 2 ligands (9O7, MG). MolNFT v1 #137619 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VU8
- Type
- protein + DNA
- Length
- 783 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D0VWU9
- Ligands
- 9O7, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 757 | — | D0VWU9 |
| T | — | dna | 14 | — | — |
| P | — | dna | 12 | — | — |
Ligands and binding sites
- 9O7 · [(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate · ligand · chains A, T, P
- MG · Magnesium ion · metal · 3 copies · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VU8 · TNA polymerase, closed ternary complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VWU9
- Elsewhere: RCSB PDB 5VU8 · PDBe 5VU8 · UniProt D0VWU9
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