MolNFT v1 · #137618 · protein + DNA
Tna polymerase, open ternary complex
5VU7: “Tna polymerase, open ternary complex”. X-ray diffraction, 3 ligands (FA2, MG, SO4). MolNFT v1 #137618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VU7
- Type
- protein + DNA
- Length
- 781 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D0VWU9
- Ligands
- FA2, MG, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 756 | — | D0VWU9 |
| T | — | dna | 13 | — | — |
| P | — | dna | 12 | — | — |
Ligands and binding sites
- FA2 · 5-(6-amino-9H-purin-9-yl)-4-hydroxytetrahydrofuran-3-yl dihydrogen phosphate · ligand · chains A, T, P
- MG · Magnesium ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VU7 · TNA polymerase, open ternary complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VWU9
- Elsewhere: RCSB PDB 5VU7 · PDBe 5VU7 · UniProt D0VWU9
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