MolNFT v1 · #137497 · protein
Crystal structure of the extended tudor domain from bmpapi
5VQG · Tudor and kh domain-containing protein homolog: “Crystal structure of the extended tudor domain from bmpapi”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #137497 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5VQG
- Type
- protein
- Length
- 203 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tudor and kh domain-containing protein homolog
- UniProt
- H9JD76
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tudor and kh domain-containing protein homolog | protein | 203 | 24% helix, 41% strand | H9JD76 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.38 | 0.77 | 15 | empty |
| 2 | 63 | 0.30 | 0.74 | 13 | empty |
Compared structures
- 5VQG · Crystal structure of the extended Tudor domain from BmPAPI · the same entry in another collection · chain A against A, TM-score 1.00
- H9JD76 · AlphaFold monomer V2.0 prediction for tudor and kh domain-containing protein homolog… · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9JD76
- Elsewhere: RCSB PDB 5VQG · PDBe 5VQG · UniProt H9JD76
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