MolNFT v1 · #137496 · protein

Crystal structure of pro-TGF-beta 1

5VQF: “Crystal structure of pro-TGF-beta 1”. X-ray diffraction, 2 ligands (NAG, BMA). MolNFT v1 #137496 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VQF
Type: protein
Length: 1,330 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P07200
Ligands: NAG, BMA

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	335	—	P07200
B	—	protein	320	—	P07200
C	—	protein	340	—	P07200
D	—	protein	335	—	P07200

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains B, C, D
BMA · beta-D-mannopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VQF · Crystal Structure of pro-TGF-beta 1 · the same entry in another collection · chain D against D, TM-score 1.00
P07200 · AlphaFold monomer V2.0 prediction for transforming growth factor beta-1 proprotein… · a predicted model of the same protein · chain B against A, TM-score 0.68

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07200
Elsewhere: RCSB PDB 5VQF · PDBe 5VQF · UniProt P07200

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