MolNFT v1 · #137475 · protein
Crystal structure of an sdr from burkholderia ambifaria in complex with NADPH with a tcep adduct
5VPS: “Crystal structure of an sdr from burkholderia ambifaria in complex with NADPH with a tcep adduct”. X-ray diffraction, 1 ligand (9G1). MolNFT v1 #137475 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VPS
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B1YU47
- Ligands
- 9G1
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 260 | — | B1YU47 |
Ligands and binding sites
- 9G1 · [(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]piperidin-4-yl]-tris(3-hydroxy-3-oxopropyl) phosphanium · ligand · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VPS · Crystal structure of an SDR from Burkholderia ambifaria in complex with NADPH with a TCEP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1YU47
- Elsewhere: RCSB PDB 5VPS · PDBe 5VPS · UniProt B1YU47
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