MolNFT v1 · #137462 · protein
Transcription factor FOSB/JUND bzip domain in its oxidized form, type- III crystal
5VPD: “Transcription factor FOSB/JUND bzip domain in its oxidized form, type- III crystal”. X-ray diffraction, 2 ligands (NA, CL). MolNFT v1 #137462 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VPD
- Type
- protein
- Length
- 242 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P53539, P17535
- Ligands
- NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 55 | — | P53539 |
| B | — | protein | 67 | — | P17535 |
| C | — | protein | 57 | — | P53539 |
| D | — | protein | 63 | — | P17535 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VPD · Transcription factor FosB/JunD bZIP domain in its oxidized form, type-III crystal · the same entry in another collection · chain A against A, TM-score 1.00
- P17535 · AlphaFold monomer V2.0 prediction for transcription factor jun-D (P17535) · a predicted model of the same protein · chain D against A, TM-score 0.81
- P53539 · AlphaFold monomer V2.0 prediction for protein fosb (P53539) · a predicted model of the same protein · chain A against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53539
- Every structure of UniProt P17535
- Elsewhere: RCSB PDB 5VPD · PDBe 5VPD · UniProt P53539 · UniProt P17535
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