MolNFT v1 · #137432 · protein
Crystal structure of hcmv pentamer in complex with neutralizing antibody 9I6
5VOD: “Crystal structure of hcmv pentamer in complex with neutralizing antibody 9I6”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #137432 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VOD
- Type
- protein
- Length
- 1,727 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6SW67, Q68674, P16837, F5HCP3, F5HET4, S6B291, Q8TCD0
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 667 | — | Q6SW67 |
| B | — | protein | 237 | — | Q68674 |
| C | — | protein | 131 | — | P16837 |
| D | — | protein | 164 | — | F5HCP3 |
| E | — | protein | 108 | — | F5HET4 |
| H | — | protein | 199 | — | S6B291 |
| L | — | protein | 221 | — | Q8TCD0 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A, D, E, C
- BMA · beta-D-mannopyranose · sugar · 5 copies
- MAN · alpha-D-mannopyranose · sugar · 4 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VOD · Crystal structure of HCMV Pentamer in complex with neutralizing antibody 9I6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6SW67
- Every structure of UniProt Q68674
- Every structure of UniProt P16837
- Every structure of UniProt F5HCP3
- Every structure of UniProt F5HET4
- Every structure of UniProt S6B291
- Every structure of UniProt Q8TCD0
- Elsewhere: RCSB PDB 5VOD · PDBe 5VOD · UniProt Q6SW67 · UniProt Q68674 · UniProt P16837 · UniProt F5HCP3 · UniProt F5HET4 · UniProt S6B291 · UniProt Q8TCD0
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