MolNFT v1 · #137410 · protein
X-ray crystal structure of halotag bound to the P1 benzoxadiazole fluorogenic ligand
5VNP: “X-ray crystal structure of halotag bound to the P1 benzoxadiazole fluorogenic ligand”. X-ray diffraction, 2 ligands (9FM, CL). MolNFT v1 #137410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VNP
- Type
- protein
- Length
- 580 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A3G2
- Ligands
- 9FM, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 290 | — | P0A3G2 |
Ligands and binding sites
- 9FM · N-{2-[2-(hexyloxy)ethoxy]ethyl}-N~2~-methyl-N~2~-{[7-(methylamino)-2,1,3-benzoxadiazol-4-yl]sulfonyl}glycinamide · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VNP · X-ray crystal structure of Halotag bound to the P1 benzoxadiazole fluorogenic ligand · the same entry in another collection · chain A against A, TM-score 1.00
- P0A3G2 · AlphaFold monomer V2.0 prediction for haloalkane dehalogenase (P0A3G2) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A3G2
- Elsewhere: RCSB PDB 5VNP · PDBe 5VNP · UniProt P0A3G2
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