MolNFT v1 · #137403 · protein
Crystal structure of SEC23A/SEC24A/SEC22 complexed with a C-terminal fa sorting motif
5VNI: “Crystal structure of SEC23A/SEC24A/SEC22 complexed with a C-terminal fa sorting motif”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #137403 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VNI
- Type
- protein
- Length
- 1,572 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q15436, O95486, O08547
- Ligands
- ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 707 | — | Q15436 |
| B | — | protein | 727 | — | O95486 |
| C | — | protein | 135 | — | O08547 |
| D | — | protein | 3 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VNI · Crystal structure of Sec23a/Sec24a/Sec22 complexed with a C-terminal FA sorting motif · the same entry in another collection · chain A against A, TM-score 1.00
- Q15436 · AlphaFold monomer V2.0 prediction for protein transport protein SEC23A (Q15436) · a predicted model of the same protein · chain A against A, TM-score 1.00
- O95486 · AlphaFold monomer V2.0 prediction for protein transport protein SEC24A (O95486) · a predicted model of the same protein · chain B against A, TM-score 0.98
- O08547 · AlphaFold monomer V2.0 prediction for vesicle-trafficking protein SEC22B (O08547) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15436
- Every structure of UniProt O95486
- Every structure of UniProt O08547
- Elsewhere: RCSB PDB 5VNI · PDBe 5VNI · UniProt Q15436 · UniProt O95486 · UniProt O08547
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