MolNFT v1 · #137378 · protein
Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from neisseria gonorrhoeae bound to NAD
5VMT: “Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from neisseria gonorrhoeae bound to NAD”. X-ray diffraction, 2 ligands (NAD, CL). MolNFT v1 #137378 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VMT
- Type
- protein
- Length
- 2,616 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B4RPP8
- Ligands
- NAD, CL
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 333 | — | B4RPP8 |
| B | — | protein | 334 | — | B4RPP8 |
| C | — | protein | 325 | — | B4RPP8 |
| D | — | protein | 334 | — | B4RPP8 |
| E | — | protein | 293 | — | B4RPP8 |
| G | — | protein | 332 | — | B4RPP8 |
| H | — | protein | 332 | — | B4RPP8 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 8 copies · chains A, C, B, D, E, G, F, H
- CL · Chloride ion · ion · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VMT · Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria… · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4RPP8
- Elsewhere: RCSB PDB 5VMT · PDBe 5VMT · UniProt B4RPP8
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