MolNFT v1 · #137355 · protein
The apo form of the triclocarban-binding single domain camelid nanobody vhh T10
5VM4: “The apo form of the triclocarban-binding single domain camelid nanobody vhh T10”. X-ray diffraction. MolNFT v1 #137355 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VM4
- Type
- protein
- Length
- 1,572 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, H, I, J, K | — | protein | 130 | — | — |
| B, D, E, F, G, L | — | protein | 132 | — | — |
Ligands and binding sites
- ACT · Acetate ion · additive · 6 copies · chains A, J, B, D, E, F, I, K
- FMT · Formic acid · additive · 6 copies · chains A, I, B, E, C, G, H, F, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VM4 · The apo form of the triclocarban-binding single domain camelid nanobody VHH T10 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5VM4 · PDBe 5VM4
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