MolNFT v1 · #137349 · protein
The apo form of the triclocarban-binding single domain camelid nanobody vhh T9
5VLV: “The apo form of the triclocarban-binding single domain camelid nanobody vhh T9”. X-ray diffraction, 1 pocket (best druggability 0.58). MolNFT v1 #137349 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VLV
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single domain camelid nanobody vhh T9
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single domain camelid nanobody vhh T9 | protein | 125 | 7% helix, 50% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.58 | 0.87 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5VLV · The apo form of the triclocarban-binding single domain camelid nanobody VHH T9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5VLV · PDBe 5VLV
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.