MolNFT v1 · #137288 · protein
Arabidopsis thaliana rhizobiales-like phosphatase 2 complexed with tungstate
5VJW: “Arabidopsis thaliana rhizobiales-like phosphatase 2 complexed with tungstate”. X-ray diffraction, 2 ligands (ZN, WO4), 1 pocket (best druggability 0.38). MolNFT v1 #137288 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5VJW
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhizobiales-like phosphatase 2
- EC
- 3.1.3.48
- UniProt
- Q9SR62
- Ligands
- ZN, WO4
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhizobiales-like phosphatase 2 (EC 3.1.3.48) | protein | 298 | 35% helix, 18% strand | Q9SR62 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.38 | 0.76 | 24 | ZN, WO4 |
Compared structures
- 5VJW · Arabidopsis thaliana Rhizobiales-like phosphatase 2 complexed with tungstate · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SR62 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase RLPH2 (Q9SR62) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SR62
- Elsewhere: RCSB PDB 5VJW · PDBe 5VJW · UniProt Q9SR62
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