MolNFT v1 · #137285 · protein

De novo photosynthetic reaction center protein equipped with heme B and ZN(II) cations

5VJT · Reaction center maquette: “De novo photosynthetic reaction center protein equipped with heme B and ZN(II) cations”. X-ray diffraction, 3 ligands (HEM, ZN, CL), 2 pockets (best druggability 0.68). MolNFT v1 #137285 on GenesisL1: 3D…

PDB: 5VJT
Type: protein
Length: 196 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reaction center maquette
Ligands: HEM, ZN, CL
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 91% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reaction center maquette	protein	196	91% helix, 0% strand	—

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
ZN · Zinc ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	354	0.68	0.82	32	HEM
2	105	0.48	0.80	22	empty

Compared structures

5VJT · De Novo Photosynthetic Reaction Center Protein Equipped with Heme B and Zn(II) cations · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5VJT · PDBe 5VJT

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