MolNFT v1 · #13726 · protein

1.6A crystal structure of pokeweed antiviral protein-III (pap-III) with methylated lysines

1LLN · Antiviral protein 3: “1.6A crystal structure of pokeweed antiviral protein-III (pap-III) with methylated lysines”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #13726 on GenesisL1: 3D structure, binding sites and…

PDB: 1LLN
Type: protein
Length: 262 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Antiviral protein 3
EC: 3.2.2.22
UniProt: Q40772
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Antiviral protein 3 (EC 3.2.2.22)	protein	262	38% helix, 23% strand	Q40772

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.51	0.79	23	empty

Modifications

Observed in the structure: 14 modified, 2 disulfide (methylation, disulfide).

Compared structures

1LLN · 1.6A crystal structure of pokeweed antiviral protein-III (pap-III) with methylated lysines · the same entry in another collection · chain A against A, TM-score 1.00
Q40772 · AlphaFold monomer V2.0 prediction for antiviral protein II/III (Q40772) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q40772
Elsewhere: RCSB PDB 1LLN · PDBe 1LLN · UniProt Q40772

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