MolNFT v1 · #137245 · protein

Crystal structure of the R515Q missense variant of human PGM1

5VIN: “Crystal structure of the R515Q missense variant of human PGM1”. X-ray diffraction, 2 ligands (CO, SO4). MolNFT v1 #137245 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VIN
Type: protein
Length: 1,124 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P36871
Ligands: CO, SO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	564	—	P36871
B	—	protein	560	—	P36871

Ligands and binding sites

CO · Cobalt (II) ion · metal · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 13 copies · chains A, B
GOL · Glycerol · additive · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VIN · Crystal Structure of the R515Q missense variant of human PGM1 · the same entry in another collection · chain A against A, TM-score 1.00
P36871 · AlphaFold monomer V2.0 prediction for phosphoglucomutase-1 (P36871) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36871
Elsewhere: RCSB PDB 5VIN · PDBe 5VIN · UniProt P36871

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