MolNFT v1 · #137197 · protein
2.6 ångström resolution crystal structure of N-terminal fragment (residues 1-406) of elongation factor G from bacillus subtilis.
5VH6: “2.6 ångström resolution crystal structure of N-terminal fragment (residues 1-406) of elongation factor G from…”. X-ray diffraction, 1 ligand (CL), 5 pockets (best druggability 0.52). MolNFT v1 #137197 on GenesisL1: 3D structure…
- PDB
- 5VH6
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor G
- UniProt
- P80868
- Ligands
- CL
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor G | protein | 376 | 27% helix, 30% strand | P80868 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.52 | 0.80 | 21 | empty |
| 2 | 105 | 0.50 | 0.82 | 29 | empty |
| 3 | 146 | 0.49 | 0.78 | 28 | empty |
| 4 | 52 | 0.47 | 0.85 | 14 | empty |
| 5 | 52 | 0.31 | 0.76 | 12 | empty |
Compared structures
- 5VH6 · 2.6 Angstrom Resolution Crystal Structure of N-terminal Fragment (residues 1-406) of… · the same entry in another collection · chain A against A, TM-score 1.00
- P80868 · AlphaFold monomer V2.0 prediction for elongation factor G (P80868) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80868
- Elsewhere: RCSB PDB 5VH6 · PDBe 5VH6 · UniProt P80868
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