MolNFT v1 · #137175 · protein

Crystal structure of HLA-C*07:02 in complex with ryr peptide

5VGE: “Crystal structure of HLA-C*07:02 in complex with ryr peptide”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #137175 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VGE
Type: protein
Length: 384 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: B4DVY0, P61769
Ligands: ZN

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	275	—	B4DVY0
B	—	protein	100	—	P61769
C	—	protein	9	—	—

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VGE · Crystal structure of HLA-C*07:02 in complex with RYR peptide · the same entry in another collection · chain A against A, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B4DVY0
Every structure of UniProt P61769
Elsewhere: RCSB PDB 5VGE · PDBe 5VGE · UniProt B4DVY0 · UniProt P61769

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