MolNFT v1 · #137166 · protein
Intradiol ring-cleavage dioxygenase from tetranychus urticae
5VG2: “Intradiol ring-cleavage dioxygenase from tetranychus urticae”. X-ray diffraction, 1 ligand (FE). MolNFT v1 #137166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VG2
- Type
- protein
- Length
- 812 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- T1K8P1
- Ligands
- FE
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| U | — | protein | 203 | — | T1K8P1 |
| A, C | — | protein | 204 | — | T1K8P1 |
| B | — | protein | 201 | — | T1K8P1 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 4 copies · chains U, A, B, C
- CAC · Cacodylate ion · additive · 9 copies · chains U, A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VG2 · Intradiol ring-cleavage Dioxygenase from Tetranychus urticae · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T1K8P1
- Elsewhere: RCSB PDB 5VG2 · PDBe 5VG2 · UniProt T1K8P1
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