MolNFT v1 · #137165 · protein

Neutron crystallographic structure of a jonesia denitrificans lytic polysaccharide monooxygenase

5VG1 · Chitinase: “Neutron crystallographic structure of a jonesia denitrificans lytic polysaccharide monooxygenase”. Neutron diffraction, 2 ligands (CU, PER). MolNFT v1 #137165 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VG1
Type: protein
Length: 284 residues
Chains: 2
Method: neutron diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chitinase
EC: 3.2.1.14
UniProt: C7R4I0
Ligands: CU, PER

Structure

neutron diffraction · 1 distinct chain · 13% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chitinase (EC 3.2.1.14)	protein	142	13% helix, 43% strand	C7R4I0

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B
PER · Peroxide ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 449 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5VG1 · Neutron crystallographic structure of a Jonesia denitrificans lytic polysaccharide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7R4I0
Elsewhere: RCSB PDB 5VG1 · PDBe 5VG1 · UniProt C7R4I0

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