MolNFT v1 · #137088 · protein

Crystal structure of the human DPF2 tandem phd finger domain

5VDC · Zinc finger protein ubi-D4: “Crystal structure of the human DPF2 tandem phd finger domain”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #137088 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VDC
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zinc finger protein ubi-D4
UniProt: Q92785
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zinc finger protein ubi-D4	protein	117	16% helix, 11% strand	Q92785

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VDC · Crystal structure of the human DPF2 tandem PHD finger domain · the same entry in another collection · chain A against A, TM-score 1.00
Q92785 · AlphaFold monomer V2.0 prediction for zinc finger protein ubi-D4 (Q92785) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92785
Elsewhere: RCSB PDB 5VDC · PDBe 5VDC · UniProt Q92785

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