GL1X · GenesisL1 explorer

MolNFT v1 · #137073 · protein

Crystal structure of human MYT1 kinase domain (untreated) in complex with saracatinib

5VCX: “Crystal structure of human MYT1 kinase domain (untreated) in complex with saracatinib”. X-ray diffraction, 1 ligand (H8H). MolNFT v1 #137073 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5VCX
Type
protein
Length
287 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q99640
Ligands
H8H

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein287—Q99640

Ligands and binding sites

  • H8H · N-(5-chloro-1,3-benzodioxol-4-yl)-7-[2-(4-methylpiperazin-1-yl)ethoxy]-5-(tetrahydro-2H-pyran-4-yloxy)quinazolin-4-amine · ligand · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5VCX · Crystal structure of human MYT1 kinase domain (untreated) in complex with saracatinib · the same entry in another collection · chain A against A, TM-score 1.00
  • Q99640 · AlphaFold monomer V2.0 prediction for membrane-associated tyrosine- and… · a predicted model of the same protein · chain A against A, TM-score 0.97

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