MolNFT v1 · #137055 · RNA
RNA hairpin structure containing TETRALOOP/RECEPTOR motif, complexed with 2-meimpg analogue
5VCF · RNA (5'- R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*CP*CP*CP*…: “RNA hairpin structure containing TETRALOOP/RECEPTOR motif, complexed with 2-meimpg analogue”. X-ray diffraction, 1 ligand (8OS). MolNFT v1 #137055 on GenesisL1: 3D…
- PDB
- 5VCF
- Type
- RNA
- Length
- 34 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'- R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*CP*CP*CP*GP*AP*AP*AP*GP*G)- 3'); RNA…
- Ligands
- 8OS
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'- R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*CP*CP*CP*GP*AP*AP*AP*GP*G)- 3') | rna | 22 | — | — |
| B | RNA (5'-R(*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3') | rna | 12 | — | — |
Ligands and binding sites
- 8OS · 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl) phosphoryl]guanosine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 699 Ų buried · 66 hydrogen bonds · nucleic-nucleic
Compared structures
- 5VCF · RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5VCF · PDBe 5VCF
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