MolNFT v1 · #137015 · protein
X-ray co-structure of nuclear receptor ror-gammat ligand binding domain with an agonist and SRC2 peptide
5VB7: “X-ray co-structure of nuclear receptor ror-gammat ligand binding domain with an agonist and SRC2 peptide”. X-ray diffraction, 2 ligands (921, NA). MolNFT v1 #137015 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VB7
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P51449
- Ligands
- 921, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 259 | — | P51449 |
Ligands and binding sites
- 921 · N-methyl-N'-(3-methylbut-2-en-1-yl)-N'-(3-phenoxyphenyl)-N-[trans-4-(pyridin-4-yl) cyclohexyl]urea · ligand · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VB7 · X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with an agonist… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51449
- Elsewhere: RCSB PDB 5VB7 · PDBe 5VB7 · UniProt P51449
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