MolNFT v1 · #136974 · RNA
RNA hairpin structure containing 2-meimpg analogue bound
5V9Z · RNA (25-mer): “RNA hairpin structure containing 2-meimpg analogue bound”. X-ray diffraction, 1 ligand (8OS). MolNFT v1 #136974 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V9Z
- Type
- RNA
- Length
- 33 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (25-mer); RNA (5'-R(P*GP*CP*AP*CP*CP*UP*CP*A)-3')
- Ligands
- 8OS
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (25-mer) | rna | 25 | — | — |
| B | RNA (5'-R(P*GP*CP*AP*CP*CP*UP*CP*A)-3') | rna | 8 | — | — |
Ligands and binding sites
- 8OS · 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl) phosphoryl]guanosine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 388 Ų buried · 35 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 5V9Z · RNA hairpin structure containing 2-MeImpG analogue bound · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5V9Z · PDBe 5V9Z
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