MolNFT v1 · #136940 · protein
Pekin duck lysozyme isoform I (del-I)
5V8G: “Pekin duck lysozyme isoform I (del-I)”. X-ray diffraction, 2 ligands (SCN, CL), 1 pocket (best druggability 0.28). MolNFT v1 #136940 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V8G
- Type
- protein
- Length
- 127 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme isoform I
- UniProt
- U3J0P1
- Ligands
- SCN, CL
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme isoform I | protein | 127 | 42% helix, 11% strand | U3J0P1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.28 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5V8G · Pekin duck lysozyme isoform I (DEL-I) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U3J0P1
- Elsewhere: RCSB PDB 5V8G · PDBe 5V8G · UniProt U3J0P1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.