GL1X · GenesisL1 explorer

MolNFT v1 · #13679 · protein

Disulfide intermediate of C89L arsenate reductase from PI258

1LK0: “Disulfide intermediate of C89L arsenate reductase from PI258”. X-ray diffraction, 2 ligands (K, CL), 1 pocket (best druggability 0.64). MolNFT v1 #13679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
1LK0
Type
protein
Length
260 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Arsenate reductase
EC
1.97.1.5
UniProt
P0A006
Ligands
K, CL
Pockets
1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BArsenate reductase (EC 1.97.1.5)protein13037% helix, 18% strandP0A006

Ligands and binding sites

  • K · Potassium ion · metal · 2 copies · chains A, B
  • CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13330.640.8048CL

Interfaces

1 interface between chains.

  • A–B · 440 Ų buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 1LK0 · Disulfide intermediate of C89L Arsenate reductase from pI258 · the same entry in another collection · chain A against A, TM-score 1.00
  • P0A006 · AlphaFold monomer V2.0 prediction for arsenate reductase (P0A006) · a predicted model of the same protein · chain A against A, TM-score 0.98

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