MolNFT v1 · #136775 · RNA
Crystal structure of the vs ribozyme - wild-type C634
5V3I · Vs ribozyme RNA: “Crystal structure of the vs ribozyme - wild-type C634”. X-ray diffraction, 6 pockets (best druggability 0.65). MolNFT v1 #136775 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V3I
- Type
- RNA
- Length
- 186 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vs ribozyme RNA
- Pockets
- 6 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vs ribozyme RNA | rna | 186 | — | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 835 | 0.65 | 0.74 | 49 | empty |
| 2 | 504 | 0.58 | 0.74 | 28 | empty |
| 3 | 424 | 0.58 | 0.76 | 26 | empty |
| 4 | 257 | 0.52 | 0.77 | 17 | empty |
| 5 | 220 | 0.43 | 0.73 | 20 | empty |
Compared structures
- 5V3I · Crystal structure of the VS ribozyme - wild-type C634 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5V3I · PDBe 5V3I
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