MolNFT v1 · #136723 · protein

Crystal structure of BHGH81 in complex with laminaro-biose

5V1W · Glycoside hydrolase: “Crystal structure of BHGH81 in complex with laminaro-biose”. X-ray diffraction, 2 ligands (BGC, PO4), 5 pockets (best druggability 0.70). MolNFT v1 #136723 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 5V1W
Type: protein
Length: 752 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycoside hydrolase
UniProt: Q9KG76
Ligands: BGC, PO4
Pockets: 5 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycoside hydrolase	protein	752	28% helix, 27% strand	Q9KG76

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
PO4 · Phosphate ion · ion · 8 copies · chains A
EDO · 1,2-ethanediol · additive · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	92	0.70	0.93	25	empty
2	159	0.60	0.83	25	BGC, EDO
3	188	0.54	0.79	33	empty
4	95	0.50	0.82	25	empty
5	99	0.41	0.77	16	PO4

Compared structures

5V1W · Crystal structure of BhGH81 in complex with laminaro-biose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KG76
Elsewhere: RCSB PDB 5V1W · PDBe 5V1W · UniProt Q9KG76

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