MolNFT v1 · #136659 · protein

Structure of hutd from pseudomonas fluorescens SBW25 (formate condition)

5V00 · Uncharacterized protein: “Structure of hutd from pseudomonas fluorescens SBW25 (formate condition)”. X-ray diffraction, 3 pockets (best druggability 0.74). MolNFT v1 #136659 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5V00
Type: protein
Length: 369 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: C3K802
Pockets: 3 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 2% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	184	2% helix, 57% strand	C3K802
B	Uncharacterized protein	protein	185	2% helix, 56% strand	C3K802

Ligands and binding sites

FMT · Formic acid · additive · 10 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.74	0.97	18	empty
2	156	0.55	0.81	21	FMT, GOL
3	125	0.55	0.82	19	GOL, FMT

Interfaces

1 interface between chains.

A–B · 1027 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

5V00 · Structure of HutD from Pseudomonas fluorescens SBW25 (Formate condition) · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3K802
Elsewhere: RCSB PDB 5V00 · PDBe 5V00 · UniProt C3K802

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