MolNFT v1 · #136581 · protein

Protein 84 with aldehyde deformylating oxygenase activity from sulfolobus tokodaii (monoclinic)

5UXG: “Protein 84 with aldehyde deformylating oxygenase activity from sulfolobus tokodaii (monoclinic)”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.88). MolNFT v1 #136581 on GenesisL1: 3D structure, binding sites and…

PDB: 5UXG
Type: protein
Length: 423 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aldehyde deformylating oxygenase
UniProt: Q970H5
Ligands: PO4
Pockets: 3 · best druggability 0.88

Structure

x-ray diffraction · 2 distinct chains · 80% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aldehyde deformylating oxygenase	protein	212	81% helix, 0% strand	Q970H5
B	Aldehyde deformylating oxygenase	protein	211	79% helix, 0% strand	Q970H5

Ligands and binding sites

PO4 · Phosphate ion · ion · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1178	0.88	0.88	112	empty
2	210	0.48	0.75	25	empty
3	190	0.48	0.75	20	empty

Interfaces

1 interface between chains.

A–B · 746 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5UXG · Protein 84 with aldehyde deformylating oxygenase activity from Sulfolobus tokodaii… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q970H5
Elsewhere: RCSB PDB 5UXG · PDBe 5UXG · UniProt Q970H5

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