MolNFT v1 · #136511 · protein
Crystal structure of an antigenic nucleotidyltransferase-like protein from paracoccidioides brasiliensis
5UVD: “Crystal structure of an antigenic nucleotidyltransferase-like protein from paracoccidioides brasiliensis”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.57). MolNFT v1 #136511 on GenesisL1: 3D structure, binding…
- PDB
- 5UVD
- Type
- protein
- Length
- 218 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleotidyltransferase-like protein
- UniProt
- C1GM11
- Ligands
- MG
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleotidyltransferase-like protein | protein | 218 | 43% helix, 21% strand | C1GM11 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 302 | 0.57 | 0.76 | 27 | MG |
| 2 | 60 | 0.30 | 0.75 | 16 | empty |
| 3 | 61 | 0.29 | 0.74 | 19 | empty |
Compared structures
- 5UVD · Crystal structure of an antigenic nucleotidyltransferase-like protein from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1GM11
- Elsewhere: RCSB PDB 5UVD · PDBe 5UVD · UniProt C1GM11
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