MolNFT v1 · #136438 · protein
JAK2 JH2 in complex with ikk-2 inhibitor VI
5UT3 · Tyrosine-protein kinase JAK2: “JAK2 JH2 in complex with ikk-2 inhibitor VI”. X-ray diffraction, 1 ligand (IK1), 2 pockets (best druggability 0.66). MolNFT v1 #136438 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UT3
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein kinase JAK2
- EC
- 2.7.10.2
- UniProt
- O60674
- Ligands
- IK1
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein kinase JAK2 (EC 2.7.10.2) | protein | 272 | 44% helix, 21% strand | O60674 |
Ligands and binding sites
- IK1 · 5-phenyl-2-ureidothiophene-3-carboxamide · ligand · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 376 | 0.66 | 0.80 | 38 | IK1, GOL, ACT |
| 2 | 73 | 0.39 | 0.79 | 17 | empty |
Compared structures
- 5UT3 · JAK2 JH2 in complex with IKK-2 Inhibitor VI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60674
- Elsewhere: RCSB PDB 5UT3 · PDBe 5UT3 · UniProt O60674
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