MolNFT v1 · #136354 · protein

Dpy-21 in complex with FE(II) and alpha-ketoglutarate

5UQD: “Dpy-21 in complex with FE(II) and alpha-ketoglutarate”. X-ray diffraction, 2 ligands (AKG, FE2). MolNFT v1 #136354 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5UQD
Type: protein
Length: 324 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9GRZ3
Ligands: AKG, FE2

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	324	—	Q9GRZ3

Ligands and binding sites

AKG · 2-oxoglutaric acid · ligand · chains A
FE2 · Fe (II) ion · metal · chains A
PG0 · 2-(2-methoxyethoxy)ethanol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5UQD · DPY-21 in complex with Fe(II) and alpha-Ketoglutarate · the same entry in another collection · chain A against A, TM-score 1.00
Q9GRZ3 · AlphaFold monomer V2.0 prediction for lysine-specific demethylase 9 (Q9GRZ3) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9GRZ3
Elsewhere: RCSB PDB 5UQD · PDBe 5UQD · UniProt Q9GRZ3

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