MolNFT v1 · #136259 · RNA
Dimerized structure gives further insight into the function of the novel RNA gene: HAR1
5UNE · RNA (47-mer): “Dimerized structure gives further insight into the function of the novel RNA gene: HAR1”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.63). MolNFT v1 #136259 on GenesisL1: 3D structure, binding…
- PDB
- 5UNE
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (47-mer)
- Ligands
- MG
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (47-mer) | rna | 47 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 737 | 0.63 | 0.74 | 38 | empty |
| 2 | 373 | 0.53 | 0.74 | 26 | empty |
| 3 | 257 | 0.46 | 0.73 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 2252 Ų buried · 217 hydrogen bonds · nucleic-nucleic
Compared structures
- 5UNE · Dimerized Structure Gives Further Insight Into the Function of the Novel RNA Gene: HAR1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5UNE · PDBe 5UNE
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